Dinabandhu
Sequence conservation
(C)
0.52
0.05
0.409
0.433
0.376
0.303
Conservation thresold
(CT)
0.61
0.15
0.5
0.53
0.47
0.4
No. of polymerphic
sites of Pi1
333
406
87
116
89
102
No. of polymerphic
sites of Pi2
245
432
139
319
371
304
Total no. of
polymerphic sites
557
530
294
580
641
394
between Pi1and Pi2
No of mutations of Pi1
382
509
90
120
90
106
No of mutations of Pi2
276
517
146
344
407
342
Total no of mutations
between Pi1 and Pi2
823
922
379
756
841
595
No of shared mutations
between p1 and Pi2
39
147
8
18
13
14
Avg. no. of nuc. subs.
per site between Pi1
0.34013
0.56726
0.31939 0.42681 0.47067
0.60162
and Pi2 (Dxy)
No. of net nuc. subs.
per site between Pi1
0.182.55
0.09743
0.21078 0.28438 0.32188
0.30509
and Pi2 (Da)
Nuc. divesity of Pi1
0.16609
0.37276
0.08322 0.07478 0.05566
0.14444
Nuc. divesity of Pi2
0.14907
0.56691
0.13399 0.21008 0.24192
0.44861
Nuc. divesity between
Pi1 and Pi2 (Pi (t))
0.26311
0.49776
0.23507 0.31305 0.34192
0.47958
Avg. no. of
synonymous. sites
281.1
107.9
166.97
235.53
249.5
109.56
Avg. no. of non
synonymous. sites
873.9
363.1
526.03
781.47
797.5
334.44
Avg. no. of synon.
Subs. per site between
0.66084
0.55996
0.12977 0.60423 0.61658
0.52425
Pi1 and Pi2
Avg. no. of non synon.
Subs. Per site between
0.13475
0.48096
0.26615 0.21956 0.25147
0.47039
Pi1 and Pi2
Tajima’ D (nonsyn/syn)
ratio
-1.06504 -0.02764
0.47711 1.11838 1.267711 0.79533
(2) McDonald–Kreitman analysis
No. of sites
1779
995
1807
1226
1439
1440
170
International Journal of Bioinformatics and Biological Sciences : v.2 n.3&4. Dec. 2014